{
  "_id": "6ad603305a02066177b9ac8b",
  "Package": "heatmap4",
  "Title": "Simple Heatmap Function",
  "Version": "0.1.8",
  "Author": "Ritu Roy <ritu.roy@ucsf.edu>, Adam Olshen\n<adam.olshen@ucsf.edu>, Anishka Dhar <anishka.dhar@ucsf.edu>",
  "Maintainer": "Ritu Roy <ritu.roy@ucsf.edu>",
  "Description": "A color image of a numerical matrix. A dendrogram can be\nadded to the left side and to the top. This package takes the\noriginal heatmap function and reduces the argument complexity.",
  "License": "GPL (>=2)",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "LazyData": "true",
  "VignetteBuilder": "knitr",
  "Repository": "https://rituroy.r-universe.dev",
  "Date/Publication": "2025-02-12 01:16:07 UTC",
  "RemoteUrl": "https://github.com/rituroy/heatmap4",
  "RemoteRef": "HEAD",
  "RemoteSha": "80c97dc10bce301a38fb9578c1b0a3ef3ee13155",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-19 11:42:15 UTC",
    "User": "root"
  },
  "_user": "rituroy",
  "_type": "src",
  "_file": "heatmap4_0.1.8.tar.gz",
  "_fileid": "https://r2.ropensci.org/54701ca063b4e87fa2139dc2dd780150ff7bf86cd941c7f30fc44d9d0ba66894",
  "_filesize": 1194266,
  "_sha256": "54701ca063b4e87fa2139dc2dd780150ff7bf86cd941c7f30fc44d9d0ba66894",
  "_expires": "2027-01-27T11:46:54.000Z",
  "_created": "2026-10-19T11:42:15.000Z",
  "_published": "2026-10-19T11:46:55.979Z",
  "_buildurl": "https://github.com/r-universe/rituroy/actions/runs/39245988453",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 118039873355,
      "time": 128,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12183254290"
    },
    {
      "job": 118039873413,
      "time": 106,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12183287932"
    },
    {
      "job": 118039873295,
      "time": 154,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12184146072"
    },
    {
      "job": 118039873435,
      "time": 180,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12184280927"
    },
    {
      "job": 118038037443,
      "time": 274,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12183082675"
    },
    {
      "job": 118039873241,
      "time": 83,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12183911282"
    },
    {
      "job": 118039873287,
      "time": 90,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12183827126"
    },
    {
      "job": 118039873313,
      "time": 64,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12183553881"
    },
    {
      "job": 118039873486,
      "time": 82,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12182738985"
    }
  ],
  "_upstream": "https://github.com/rituroy/heatmap4",
  "_commit": {
    "id": "80c97dc10bce301a38fb9578c1b0a3ef3ee13155",
    "author": "rituroy <ritu.roy@ucsf.edu>",
    "committer": "rituroy <ritu.roy@ucsf.edu>",
    "message": "v0.1.8\n",
    "time": 1739322967
  },
  "_maintainer": {
    "name": "Ritu Roy",
    "email": "ritu.roy@ucsf.edu",
    "login": "rituroy",
    "description": "",
    "uuid": 12173738
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "DescTools",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "stats",
      "role": "Suggests"
    },
    {
      "package": "marray",
      "role": "Suggests"
    },
    {
      "package": "RColorBrewer",
      "role": "Suggests"
    },
    {
      "package": "psy",
      "role": "Suggests"
    }
  ],
  "_owner": "rituroy",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "rituroy",
      "count": 6,
      "uuid": 12173738
    }
  ],
  "_userbio": {
    "uuid": 12173738,
    "type": "user",
    "name": "rituroy",
    "followers": 2
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/heatmap4"
  },
  "_devurl": "https://github.com/rituroy/heatmap4",
  "_searchresults": 4,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/heatmap4.html",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_cranurl": false,
  "_exports": [
    "cutCluster",
    "generate_heatmap",
    "getCluster",
    "getCosineDist",
    "getDist",
    "getKappaDist",
    "heatmap4",
    "heatmapColorBar",
    "sampleColorLegend"
  ],
  "_datasets": [
    {
      "name": "amplifDat",
      "title": "Gene amplification status",
      "object": "amplifDat",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [],
      "rows": 3469,
      "table": true,
      "tojson": true
    },
    {
      "name": "anno",
      "title": "Gene information",
      "object": "anno",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Chrom",
        "kb"
      ],
      "rows": 3469,
      "table": true,
      "tojson": true
    },
    {
      "name": "chrInfo",
      "title": "Chromosomal information",
      "object": "chrInfo",
      "class": [
        "data.frame"
      ],
      "fields": [
        "chrom",
        "length",
        "centromere"
      ],
      "rows": 24,
      "table": true,
      "tojson": true
    },
    {
      "name": "genomDat",
      "title": "Gene expression data",
      "object": "genomDat",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "X1",
        "X2",
        "X3",
        "X4",
        "X5",
        "X6",
        "X7",
        "X8",
        "X9",
        "X10",
        "X11",
        "X12",
        "X13",
        "X14",
        "X15",
        "X16",
        "X17",
        "X18",
        "X19",
        "X20",
        "X21",
        "X22",
        "X23",
        "X24",
        "X25",
        "X26",
        "X27",
        "X28",
        "X29",
        "X30",
        "X31",
        "X32",
        "X33",
        "X34",
        "X35",
        "X36",
        "X37",
        "X38",
        "X39"
      ],
      "rows": 3469,
      "table": true,
      "tojson": true
    },
    {
      "name": "phen",
      "title": "Phenotypic (patient information) data",
      "object": "phen",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "sex",
        "age_year",
        "smoking",
        "smoking_packYear",
        "alcohol",
        "alcohol_unitYear"
      ],
      "rows": 39,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "amplifDat",
      "title": "Gene amplification status",
      "topics": [
        "amplifDat"
      ]
    },
    {
      "page": "anno",
      "title": "Gene information",
      "topics": [
        "anno"
      ]
    },
    {
      "page": "chrInfo",
      "title": "Chromosomal information",
      "topics": [
        "chrInfo"
      ]
    },
    {
      "page": "colorBar",
      "title": "Calibration bar for color images.",
      "topics": [
        "colorBar"
      ]
    },
    {
      "page": "cutCluster",
      "title": "Cluster designation.",
      "topics": [
        "cutCluster"
      ]
    },
    {
      "page": "generate_heatmap",
      "title": "Generate a Heat Map.",
      "topics": [
        "generate_heatmap"
      ]
    },
    {
      "page": "genomDat",
      "title": "Gene expression data",
      "topics": [
        "genomDat"
      ]
    },
    {
      "page": "getCluster",
      "title": "Hierarchical cluster analysis based on various distance methods.",
      "topics": [
        "getCluster"
      ]
    },
    {
      "page": "getCosineDist",
      "title": "Cosine distance based distance matrix.",
      "topics": [
        "getCosineDist"
      ]
    },
    {
      "page": "getDist",
      "title": "Returns a distance matrix.",
      "topics": [
        "getDist"
      ]
    },
    {
      "page": "getKappaDist",
      "title": "Cohen's kappa coefficient based distance matrix.",
      "topics": [
        "getKappaDist"
      ]
    },
    {
      "page": "heatmap4",
      "title": "Heatmap internal function.",
      "topics": [
        "heatmap4"
      ]
    },
    {
      "page": "heatmapColorBar",
      "title": "Returns a color bar.",
      "topics": [
        "heatmapColorBar"
      ]
    },
    {
      "page": "phen",
      "title": "Phenotypic (patient information) data",
      "topics": [
        "phen"
      ]
    },
    {
      "page": "rect.hclust.my",
      "title": "rect.hclust.my.",
      "topics": [
        "rect.hclust.my"
      ]
    },
    {
      "page": "sampleColorLegend",
      "title": "Returns a legend.",
      "topics": [
        "sampleColorLegend"
      ]
    }
  ],
  "_readme": "https://github.com/rituroy/heatmap4/raw/HEAD/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "heatmap4.Rmd",
      "filename": "heatmap4.html",
      "title": "heatmap4",
      "engine": "knitr::rmarkdown",
      "headings": [
        "1. Introduction",
        "2. Loading heatmap4 package",
        "3. Example Data",
        "4. Generate Heatmap",
        "5. More"
      ],
      "created": "2024-01-04 21:19:47",
      "modified": "2025-02-05 03:16:48",
      "commits": 3
    }
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "heatmap4",
  "_universes": [
    "rituroy"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.8",
      "date": "2026-10-19T11:44:24.000Z",
      "distro": "resolute",
      "commit": "80c97dc10bce301a38fb9578c1b0a3ef3ee13155",
      "fileid": "https://r2.ropensci.org/e384537fee0e504cdeea512d3105d9f98ebcccb3a2cfb6b158a681027bc05627",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rituroy/actions/runs/39245988453"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.8",
      "date": "2026-10-19T11:44:08.000Z",
      "distro": "resolute",
      "commit": "80c97dc10bce301a38fb9578c1b0a3ef3ee13155",
      "fileid": "https://r2.ropensci.org/d6d1719c48759e23405d9409a92db9435e782cff336b636a9fa6ea0629ccadf7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rituroy/actions/runs/39245988453"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.8",
      "date": "2026-10-19T11:45:16.000Z",
      "commit": "80c97dc10bce301a38fb9578c1b0a3ef3ee13155",
      "fileid": "https://r2.ropensci.org/9c31a7a1f6e06f08d25c216817444a1fd6833d7694830be4132aa61737ce407a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rituroy/actions/runs/39245988453"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.8",
      "date": "2026-10-19T11:45:34.000Z",
      "commit": "80c97dc10bce301a38fb9578c1b0a3ef3ee13155",
      "fileid": "https://r2.ropensci.org/889b3b8b8adf1e6fa3e3054189ef2e3ee349394ff006e7954672de27693a081f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rituroy/actions/runs/39245988453"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.8",
      "date": "2026-10-19T11:43:54.000Z",
      "commit": "80c97dc10bce301a38fb9578c1b0a3ef3ee13155",
      "fileid": "https://r2.ropensci.org/728d047dfe51ba32c2e13d657582c920d79465923437377461d9cec26555da53",
      "status": "success",
      "buildurl": "https://github.com/r-universe/rituroy/actions/runs/39245988453"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.8",
      "date": "2026-10-19T11:43:38.000Z",
      "commit": "80c97dc10bce301a38fb9578c1b0a3ef3ee13155",
      "fileid": "https://r2.ropensci.org/9872e88e502deb3a2552941777b9e744b1b209ef1597e2333420f5b66f24219b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rituroy/actions/runs/39245988453"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.8",
      "date": "2026-10-19T11:43:19.000Z",
      "commit": "80c97dc10bce301a38fb9578c1b0a3ef3ee13155",
      "fileid": "https://r2.ropensci.org/4af2c5cc08128c441f99b0e3d7d98a88da0978fb8aa17c47bfd4c1c56aecec02",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rituroy/actions/runs/39245988453"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.8",
      "date": "2026-10-19T11:43:37.000Z",
      "commit": "80c97dc10bce301a38fb9578c1b0a3ef3ee13155",
      "fileid": "https://r2.ropensci.org/6b9ee3d0ac9a44c57a1736742f3573900a16c3f8ca4aaa9ad5eeea4f2671a783",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rituroy/actions/runs/39245988453"
    }
  ]
}